Title | Modeling Peptide-Protein Interactions [electronic resource] : Methods and Protocols / edited by Ora Schueler-Furman, Nir London |
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Imprint | New York, NY : Springer New York : Imprint: Humana Press, 2017 |
Connect to | http://dx.doi.org/10.1007/978-1-4939-6798-8 |
Descript | XI, 311 p. 87 illus., 68 illus. in color. online resource |
The Usage of ACCLUSTER for Peptide Binding Site Prediction -- Detection of Peptide-Binding Sites on Protein Surfaces using the Peptimap Server -- Peptide Sub-Optimal Conformation Sampling for the Prediction of Protein-Peptide Interactions -- Template-Based Prediction of Protein-Peptide Interactions by Using GalaxyPepDock -- Application of the ATTRACT Coarse-Grained Docking and Atomistic Refinement for Predicting Protein-Peptide Interactions -- Highly Flexible Protein-Peptide Docking Using CABS-Dock -- AnchorDock for Blind Flexible Docking of Peptides to Proteins -- Information-Driven, Ensemble Flexible Peptide Docking Using HADDOCK -- Modeling Peptide-Protein Structure and Binding Using Monte Carlo Sampling Approaches: Rosetta FlexPepDock & FlexPepBind -- Flexible Backbone Methods for Predicting and Designing Peptide Specificity -- SImplifying the Design of Protein-Peptide Interaction Specificity with Sequence-Based Representations of Atomistic Models -- Binding Specificity Profiles from Computational Peptide Screening -- Enriching Peptide Libraries for Binding Affinity and Specificity through Computationally Directed Library Design -- Investigating Protein-Peptide Interactions Using the Schrödinger Computational Suite -- Identifying Loop-Mediated Protein-Protein Interactions using LoopFinder -- Protein-Peptide Interaction Design: PepCrawler and PinaColada -- Modeling and Design of Peptidomimetics to Modulate Protein-Protein Interactions