Title | Plant Genomics Databases [electronic resource] : Methods and Protocols / edited by Aalt D.J van Dijk |
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Imprint | New York, NY : Springer New York : Imprint: Humana Press, 2017 |
Connect to | http://dx.doi.org/10.1007/978-1-4939-6658-5 |
Descript | XII, 336 p. 141 illus., 136 illus. in color. online resource |
Ensembl Plants: Integrating Tools for Visualizing, Mining and Analyzing Plant Genomics Data -- PGSB/MIPS PlantsDB Database Framework for the Integration and Analysis of Plant Genome Data -- Plant Genome DataBase Japan (PGDBj) -- FLAGdb++: A Bioinformatic Environment to Study and Compare Plant Genomes -- Mining Plant Genomic and Genetic Data Using the GnpIS Information System -- The Bio-Analytic Resource for Plant Biology -- The Evolution of Soybean Knowledge Base (SoyKB) -- Using TropGeneDB: a Database Containing Data on Molecular Markers, QTLs, Maps, Genotypes, and Phenotypes for Tropical Crops -- Species-Specific Genome Sequence Databases: A Practical Review -- A Guide to the PLAZA 3.0 Plant Comparative Genomics Database -- Exploring Plant Co-Expression and Gene-Gene Interactions with CORNET 3.0 -- PlaNet: Comparative Co-Expression Network Analyses for Plants -- Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza sativa and Other Plant Species -- Pathway Analysis and Omics Data Visualization using Pathway Genome Databases: FragariaCyc, A Case Study -- CSGRqtl: A Comparative Quantitative Trait Locus Database for Saccharinae Grasses -- Plant Genome Duplication Database -- Variant Effect Prediction Analysis using Resources Available at Gramene Database -- Plant Promoter Database -- Construction of the Leaf Senescence Database and Functional Assessment of Senescence-Associated Genes