Title | Glycoinformatics [electronic resource] / edited by Thomas Lütteke, Martin Frank |
---|---|
Imprint | New York, NY : Springer New York : Imprint: Humana Press, 2015 |
Connect to | http://dx.doi.org/10.1007/978-1-4939-2343-4 |
Descript | XVI, 506 p. 182 illus., 146 illus. in color. online resource |
Annotation of Glycomics MS and MS/MS Spectra Using the GlycoWorkbench Software Tool -- GlycoBase and autoGU: Resources for Interpreting HPLC-Glycan Data -- NMR Chemical Shift Prediction of Glycans: Application of the Computer Program CASPER in Structural Analysis -- Handling and Conversion of Carbohydrate Sequence Formats and Monosaccharide Notation -- Bacterial, Plant, and Fungal Carbohydrate Structure Databases: Daily Usage -- Using NMR Data on GLYCOSCIENCES -- Glycomic Analysis Using KEGG GLYCAN -- GlycomeDB -- Eukaryotic Glycosylation: Online Methods for Site-Prediction on Protein Sequences -- Analyzing Glycan Structure Synthesis with the Glycan Pathway Predictor (GPP) Tool -- Functional Network in Post-Translational Modifications: Glyco-Net in Glycoconjugate Data Bank -- JCGGDB: Japan Consortium for Glycobiology and Glycotechnology DataBase -- Glycan Array Data Management at Consortium for Functional Glycomics -- Analyzing Glycan Binding Patterns with the ProfilePSTMM Tool -- Exploring the Specificities of Glycan-Binding Proteins Using Glycan Array Data and the GlycoSearch Software -- Statistical Analysis of Amino Acids in the Vicinity of Carbohydrate Residues Performed by GlyVicinity -- Tools to Assist Determination and Validation of Carbohydrate 3D Structure Data -- Glyco3D : A Portal for Structural Glycosciences -- Solution Conformation of Carbohydrates: A View by Using NMR Assisted by Modeling -- Informing Saccharide Structural NMR Studies with Density Functional Theory Calculations -- Energy Maps for Glycosidic Linkage Conformations -- Conformational Analysis of Oligo- and Polysaccharides Using Molecular Dynamics Simulations -- Molecular Dynamics Simulations of Membrane- and Protein-Bound Glycolipids Using GLYCAM -- Lipopolysaccharide Membrane Building and Simulation -- Molecular Dynamics Simulations of Glycoproteins Using CHARMM -- Calculating Binding Free Energies for Protein-Carbohydrate Complexes -- Scoring Functions for AutoDock -- Structures of Glycans Bound to Receptors from Saturation Transfer Difference (STD) NMR Spectroscopy: Quantitative Analysis by Using CORCEMA-ST -- QM/MM Methods for Studying Enzymatic Reactions of Glycosyltransferases