Title | RNA Bioinformatics [electronic resource] / edited by Ernesto Picardi |
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Imprint | New York, NY : Springer New York : Imprint: Humana Press, 2015 |
Connect to | http://dx.doi.org/10.1007/978-1-4939-2291-8 |
Descript | XII, 415 p. 102 illus., 73 illus. in color. online resource |
Free Energy Minimization to Predict RNA Secondary Structures and Computational RNA Design -- RNA Secondary Structure Prediction from Multi-aligned Sequences -- A Simple Protocol for the Inference of RNA Global Pairwise Alignments -- De Novo Secondary Structure Motif Discovery Using RNAProfile -- Drawing and Editing the Secondary Structure(s) of RNA -- Modeling and Predicting RNA Three-dimensional Structures -- Fast Prediction of RNA-RNA Interaction Using Heuristic Algorithm -- Quality Control of RNA-Seq Experiments -- Accurate Mapping of RNA-seq Data -- Quantifying Entire Transcriptomes by Aligned RNA-Seq Data -- Transcriptome Assembly and Alternative Splicing Analysis -- Detection of Post-transcriptional RNA Editing Events -- Prediction of miRNA Targets -- Using Deep Sequencing Data for Identification of Editing Sites in Mature miRNAs -- NGS-Trex: An Automatic Analysis Workflow for RNA-Seq Data -- e-DNA Meta-barcoding: From NGS Raw Data to Taxonomic Profiling -- Deciphering Metatranscriptomic Data -- RIP-Seq Data Analysis to Determine RNA-protein Associations -- The ViennaRNA Web Services -- Exploring the RNA Editing Potential of RNA-Seq Data by ExpEdit -- A Guideline for the Annotation of UTR Regulatory Elements in the UTRsite Collection -- Rfam: Annotating Families of Non-coding RNA Sequences -- ASPicDB: A Database Web Tool for Alternative Splicing Analysis -- Analysis of Alternative Splicing Events in Custom Gene Datasets by AStalavista -- Computational Design of Artificial RNA Molecules For Gene Regulation